AhoCorasick

Defined in aho-corasick.hpp.

This class implements a trie based data structure with suffix links to be used with the Aho-Corasick dictionary searching algorithm. An introduction to this algorithm can be found at:

https://en.wikipedia.org/wiki/Aho%E2%80%93Corasick_algorithm

The implementation of AhoCorasick uses two different types of node; active and inactive. An active node is a node that is currently a node in the trie. An inactive node is a node that used to be part of the trie, but has since been removed. It may later become active again after being reinitialised, and exists as a way of minimising how frequently memory needs to be allocated and deallocated for nodes.

Several helper functions are provided in the aho_corasick namespace.

Public Types
using	const_iterator = typename word_type::const_iterator
	Used for word_type iterators.
using	index_type = size_t
	Alias for the index of a node in the trie.

Public Member Functions
	AhoCorasick ()
	Construct an empty AhoCorasick.
	AhoCorasick (AhoCorasick &&)=default
	Default move constructor.
	AhoCorasick (AhoCorasick const &)=default
	Default copy constructor.
rx::iterator_range< std::set< index_type >::const_iterator >	active_nodes () const
	Return the active nodes.
template<typename Iterator>
index_type	add_word (Iterator first, Iterator last)
	Check and add a word to the trie.
template<typename Iterator>
index_type	add_word_no_checks (Iterator first, Iterator last)
	Add a word to the trie.
std::set< index_type >::iterator	begin_nodes () const noexcept
	Return an iterator pointing to the first active node.
std::set< index_type >::const_iterator	cbegin_nodes () const noexcept
	Return a const iterator pointing to the first active node.
std::set< index_type >::const_iterator	cend_nodes () const noexcept
	Return a const iterator pointing one beyond the last active node.
index_type	child (index_type parent, letter_type letter) const
	Return the child of parent with edge-label letter.
index_type	child_no_checks (index_type parent, letter_type letter) const
	Return the child of parent with edge-label letter.
std::set< index_type >::iterator	end_nodes () const noexcept
	Return an iterator pointing one beyond the last active node.
size_t	height (index_type i) const
	Calculate the height of a node.
size_t	height_no_checks (index_type i) const
	Calculate the height of a node.
AhoCorasick &	init ()
	Reinitialise an existing AhoCorasick object.
Node const &	node (index_type i) const
	Return the node given an index.
Node const &	node_no_checks (index_type i) const
	Return the node given an index.
size_t	number_of_nodes () const noexcept
	Returns the number of nodes in the trie.
AhoCorasick &	operator= (AhoCorasick &&)=default
	Default move assignment.
AhoCorasick &	operator= (AhoCorasick const &)=default
	Default copy assignment.
template<typename Iterator>
index_type	rm_word (Iterator first, Iterator last)
	Check and add a word to the trie.
template<typename Iterator>
index_type	rm_word_no_checks (Iterator first, Iterator last)
	Remove a word from the trie.
word_type	signature (index_type i) const
	Find the signature of a node (out-of-place).
void	signature (word_type &w, index_type i) const
	Find the signature of a node (in-place).
word_type	signature_no_checks (index_type i) const
	Find the signature of a node (out-of-place).
void	signature_no_checks (word_type &w, index_type i) const
	Find the signature of a node (in-place).
index_type	suffix_link (index_type current) const
	Calculate the index of the suffix link of a node.
index_type	suffix_link_no_checks (index_type current) const
	Calculate the index of the suffix link of a node.
void	throw_if_node_index_not_active (index_type i) const
	Check if an index corresponds to a node currently in the trie.
void	throw_if_node_index_out_of_range (index_type i) const
	Check if an index corresponds to a node.
index_type	traverse (index_type current, letter_type a) const
	Traverse the trie using suffix links where necessary.
index_type	traverse_no_checks (index_type current, letter_type a) const
	Traverse the trie using suffix links where necessary.

Constructor & Destructor Documentation

AhoCorasick() [1/3]

AhoCorasick

(

)

Construct an AhoCorasick containing only the root that corresponds to the empty word \(\varepsilon\).

AhoCorasick() [2/3]

AhoCorasick ( AhoCorasick const & )

default

Default copy constructor.

AhoCorasick() [3/3]

AhoCorasick ( AhoCorasick && )

default

Default move constructor.

Member Function Documentation

active_nodes()

rx::iterator_range< std::set< index_type >::const_iterator > active_nodes ( ) const

inlinenodiscard

This function returns the active nodes of the trie.

Returns

A value of type rx::iterator_range<std::set<index_type>::const_iterator>.

Exceptions

This function guarantees not to throw a LibsemigroupsException.

Complexity

Constant.

add_word()

template<typename Iterator>

index_type add_word	(	Iterator	first,
		Iterator	last )

This function does the same as add_word_no_checks(Iterator, Iterator) after first checking that the word corresponding to first and last does not correspond to an existing terminal node in the trie.

Exceptions

LibsemigroupsException

if the word corresponding to first and last corresponds to an existing terminal node in the trie.

See also

add_word_no_checks.

add_word_no_checks()

template<typename Iterator>

index_type add_word_no_checks	(	Iterator	first,
		Iterator	last )

Calling this function immediately adds the given word to the trie, and makes the final node on the path labelled by this word terminal (if it wasn't already). After adding a word, existing suffix links become invalid. If an identical word has already been added to the trie, then this function does nothing. If first == last, then this function does nothing.

Template Parameters

Iterator

the type of the 1st and 2nd parameters.

Parameters

first	iterator pointing to the first letter of the word to add.
last	one beyond the last letter of the word to add.

Returns

An index_type corresponding to the final node added to the trie. This node will have a signature equal to that of the given word.

Exceptions

This function guarantees not to throw a LibsemigroupsException.

Complexity

Linear in the distance between first and last.

See also

signature

begin_nodes()

std::set< index_type >::iterator begin_nodes ( ) const

inlinenodiscardnoexcept

This function returns an iterator pointing to the first active node in the trie.

Returns

A value of type std::set<index_type>::iterator.

Exceptions

This function is noexcept and is guaranteed never to throw.

Complexity

Constant.

cbegin_nodes()

std::set< index_type >::const_iterator cbegin_nodes ( ) const

inlinenodiscardnoexcept

This function returns a const iterator pointing to the first active node in the trie.

Returns

A value of type std::set<index_type>::const_iterator.

Exceptions

This function is noexcept and is guaranteed never to throw.

Complexity

Constant.

cend_nodes()

std::set< index_type >::const_iterator cend_nodes ( ) const

inlinenodiscardnoexcept

This function returns a const iterator pointing one beyond the last active node in the trie.

Returns

A value of type std::set<index_type>::const_iterator.

Exceptions

This function is noexcept and is guaranteed never to throw.

Complexity

Constant.

child()

index_type child ( index_type parent, letter_type letter ) const

inlinenodiscard

After validating parent, this function performs the same as child_no_checks(parent, letter).

Exceptions

LibsemigroupsException

if throw_if_node_index_not_active(parent) throws.

See also

child_no_checks, throw_if_node_index_not_active.

child_no_checks()

index_type child_no_checks ( index_type parent, letter_type letter ) const

inlinenodiscard

This function returns the index of the child of the node with index parent along the edge labelled by letter. If no such child exists, UNDEFINED is returned.

Parameters

parent	the index of the node whose child is sought.
letter	the edge-label connecting the parent to the desired child.

Returns

A value of type index_type.

Exceptions

This function guarantees not to throw a LibsemigroupsException.

Complexity

Constant.

Warning

This function does no checks on its arguments whatsoever. In particular, if the index parent is greater than the number of nodes that have ever been created, then bad things will happen.

end_nodes()

std::set< index_type >::iterator end_nodes ( ) const

inlinenodiscardnoexcept

This function returns an iterator pointing one beyond the last active node in the trie.

Returns

A value of type std::set<index_type>::iterator.

Exceptions

This function is noexcept and is guaranteed never to throw.

Complexity

Constant.

height()

size_t height ( index_type i ) const

inlinenodiscard

After validating i, this function performs the same as height_no_checks(i).

Exceptions

LibsemigroupsException

if throw_if_node_index_not_active(i) throws.

See also

height_no_checks, throw_if_node_index_not_active.

height_no_checks()

size_t height_no_checks ( index_type i ) const

nodiscard

Calculate the height of a node.

Parameters

i	the index of the node whose height is sought.

Returns

A value of type size_t.

Exceptions

This function guarantees not to throw a LibsemigroupsException.

Complexity

Linear in the return value which is, at worst, the maximum length of a word in the trie.

Warning

This function does no checks on its arguments whatsoever. In particular, if the index i is greater than the number of nodes that have ever been created, then bad things will happen.

init()

AhoCorasick & init

(

)

This function puts an AhoCorasick object back into the same state as if it had been newly default constructed.

Returns

A reference to this.

Exceptions

This function guarantees not to throw a LibsemigroupsException.

Complexity

Linear in the number of nodes in the trie.

node()

Node const & node ( index_type i ) const

inlinenodiscard

After validating i, this function performs the same as node_no_checks(i).

Exceptions

LibsemigroupsException

if throw_if_node_index_out_of_range(i) throws.

See also

node_no_checks, throw_if_node_index_out_of_range.

node_no_checks()

Node const & node_no_checks ( index_type i ) const

inlinenodiscard

This function returns the node stored in the trie given by the index i.

Parameters

i	the index of the node to return.

Returns

A value of type Node.

Exceptions

This function guarantees not to throw a LibsemigroupsException.

Complexity

Constant.

Note

The node returned by this function may not represent a node presently stored in the trie. See throw_if_node_index_not_active.

Warning

This function does no checks on its arguments whatsoever. In particular, if the index i is greater than the number of nodes that have ever been created, then bad things will happen.

number_of_nodes()

size_t number_of_nodes ( ) const

inlinenodiscardnoexcept

This function returns the number of nodes in the trie.

Returns

A value of type size_t.

Exceptions

This function is noexcept and is guaranteed never to throw.

Complexity

Constant.

operator=() [1/2]

AhoCorasick & operator= ( AhoCorasick && )

default

Default move assignment.

operator=() [2/2]

AhoCorasick & operator= ( AhoCorasick const & )

default

Default copy assignment.

rm_word()

template<typename Iterator>

index_type rm_word	(	Iterator	first,
		Iterator	last )

This function does the same as rm_word_no_checks(Iterator, Iterator) after first checking that the word corresponding to first and last is terminal node in the trie.

Exceptions

LibsemigroupsException

if the word corresponding to first and last does not correspond to an existing terminal node in the trie.

See also

rm_word_no_checks.

rm_word_no_checks()

template<typename Iterator>

index_type rm_word_no_checks	(	Iterator	first,
		Iterator	last )

From the trie, remove each node of the given word that is not part of the prefix of a different word.

If the given word \(W\) corresponds to a terminal node with no children, then calling this function removes the nodes \(n_i\) from the trie that correspond to the largest suffix \(W\), such that each \(n_i\) has either zero children or one. After this, existing suffix links become invalid.

If \(W\) corresponds to a terminal node \(n\) with children, then calling this function makes \(n\) not terminal.

If \(W\) does not correspond to a terminal node, then calling this function does nothing.

Template Parameters

Iterator

the type of the 1st and 2nd parameters.

Parameters

first	iterator pointing to the first letter of the word to add.
last	one beyond the last letter of the word to add.

Returns

An index_type corresponding to the node with signature equal to the given word.

Exceptions

This function guarantees not to throw a LibsemigroupsException.

Complexity

Linear in the distance between first and last.

See also

signature.

signature() [1/2]

word_type signature ( index_type i ) const

inline

After validating i, this function performs the same as signature_no_checks(i).

Exceptions

LibsemigroupsException

if throw_if_node_index_not_active(i) throws.

See also

signature_no_checks, throw_if_node_index_not_active.

signature() [2/2]

void signature ( word_type & w, index_type i ) const

inline

After validating i, this function performs the same as signature_no_checks(w, i).

Exceptions

LibsemigroupsException

if throw_if_node_index_not_active(i) throws.

See also

signature_no_checks, throw_if_node_index_not_active.

signature_no_checks() [1/2]

word_type signature_no_checks ( index_type i ) const

inline

Return the the signature of the node with index i. Recall that the signature of a node \(n\) is the word consisting of the edge labels of the unique path from the root to \(n\).

Parameters

i	the index of the node whose signature is sought.

Returns

A value of type word_type.

Exceptions

This function guarantees not to throw a LibsemigroupsException.

Complexity

Linear in the height of the node.

Warning

This function does no checks on its arguments whatsoever. In particular, if the index i is greater than the number of nodes that have ever been created, then bad things will happen.

signature_no_checks() [2/2]

void signature_no_checks	(	word_type &	w,
		index_type	i ) const

Changes w in-place to contain the signature of the node with index i . Recall that the signature of a node \(n\) is the word consisting of the edge labels of the unique path from the root to \(n\).

Parameters

w	the word to clear and change in-place.
i	the index of the node whose signature is sought.

Exceptions

This function guarantees not to throw a LibsemigroupsException.

Complexity

Linear in the height of the node.

Warning

This function does no checks on its arguments whatsoever. In particular, if the index i is greater than the number of nodes that have ever been created, then bad things will happen.

suffix_link()

index_type suffix_link ( index_type current ) const

inlinenodiscard

After validating current, this function performs the same as suffix_link_no_checks(current).

Exceptions

LibsemigroupsException

if throw_if_node_index_not_active(current) throws.

See also

suffix_link_no_checks, throw_if_node_index_not_active.

suffix_link_no_checks()

index_type suffix_link_no_checks ( index_type current ) const

nodiscard

Calculate the index of a suffix link of a node. Recall that the suffix link of a node with signature \(W\) is the node with the signature equal to that of the longest proper suffix of \(W\) contained in the trie.

Parameters

current

the index of the node whose suffix link is sought.

Returns

A value of type index_type.

Exceptions

This function guarantees not to throw a LibsemigroupsException.

Complexity

Linear in the height of the node.

Warning

This function does no checks on its arguments whatsoever. In particular, if the index current is greater than the number of nodes that have ever been created, then bad things will happen.

throw_if_node_index_not_active()

void throw_if_node_index_not_active

(

index_type

i

)

const

This function checks whether the given index i corresponds to an active node.

Parameters

i	the index to check.

Exceptions

LibsemigroupsException

if throw_if_node_index_out_of_range(i) throws, or if i is not an active node.

Complexity

Constant.

See also

throw_if_node_index_out_of_range.

throw_if_node_index_out_of_range()

void throw_if_node_index_out_of_range

(

index_type

i

)

const

This function checks if the given index i corresponds to the index of a node; either active or inactive.

Parameters

i	the index to check.

Exceptions

LibsemigroupsException

if i does not correspond to the index of a node; that is, if i is larger than the size of the container storing the indices of nodes.

Complexity

Constant.

traverse()

index_type traverse ( index_type current, letter_type a ) const

inlinenodiscard

After validating current, this function performs the same as traverse_no_checks(current, a).

Exceptions

LibsemigroupsException

if throw_if_node_index_not_active(current) throws.

See also

traverse_no_checks, throw_if_node_index_not_active.

traverse_no_checks()

index_type traverse_no_checks ( index_type current, letter_type a ) const

nodiscard

This function traverses the trie using suffix links where necessary, behaving like a combination of the goto function and the fail function in [3].

If current is the index of a node with signature \(W\), and a is the letter \(a\), then traverse_no_checks(current, a) returns the index of the node with signature equal to the longest suffix of \(Wa\) contained in the trie.

Parameters

current	the index of the node to traverse from.
a	the letter to traverse.

Returns

An value of type index_type.

Exceptions

This function guarantees not to throw a LibsemigroupsException.

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The documentation for this class was generated from the following file:

• /Users/jdm3/libsemigroups/include/libsemigroups/aho-corasick.hpp